EMBL

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ClustalW2

Category: DNA alignment, Sequencing and assembly software

Subcategories: EMBL

ClustalW2 is a general purpose multiple sequence alignment program for DNA or proteins. The online version is hosted by EMBL. It produces biologically meaningful multiple sequence alignments of divergent sequences. It calculates the best match for the selected sequences, and lines them up so that the identities, similarities and differences can be seen. Registration not required.

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GeneWise

Pairwise Sequence Alignment

Category: DNA sequencing

Subcategories: EMBL

The Wise2 form compares a protein sequence to a genomic DNA sequence, allowing for introns and frameshifting errors. Registration not required.

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EMBL PhD Program

Category: PhD programs and Masters

Subcategories: PhD program , EMBL

The EMBL International PhD Programme, originally established in 1983, represents the flagship of EMBL's commitment to first class training and education. Registration not required.

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ENA

a public archive and repository where nucleotide sequences generated by next-generation sequencing methodologies can be submitted

Category: Gene information search

Subcategories: EMBL

ENA (European Nucleotide Archive) operates as a public archive and repository where nucleotide sequences generated by next-generation sequencing methodologies can be submitted. Data can be searched interactively and programmatically using free text and sequence similiary search based queries. It is a useful utility also for patent data search.ENA Registration not required.

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EBI

EMBL European Bioinformatic Istitute

Category: Gene information search, Protein informations

Subcategories: EMBL

EBI (EMBL European Bioinformatic Istitute) home page provides a central access point to search several databases for information on genes, proteins, enzymes etc. Registration not required.

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Genome-Wide Association (GWA) Studies

Category: Genetic variations

Subcategories: EMBL

The genome-wide association study (GWAS) publications listed in this catalog establish genetic associations between hundreds of genomic loci and complex (multigenic)traits, many of them diseases. Only those attempting to assay at least 100,000 single nucleotide polymorphisms (SNPs) in the initial stage, are included here. Registration not required.

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ArrayExpress Archive

Category: DNA microarray data analysis

Subcategories: EMBL

The ArrayExpress Archive (EMBL-EBI) is a database of functional genomics experiments including gene expression where you can query and download data collected to MIAME and MINSEQE standards. Registration not required.

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PDBsum: Protein 3D dabase

Category: Protein informations

Subcategories: EMBL

PDBsum provides an at-a-glance overview of every macromolecular structure deposited in the Protein Data Bank (PDB), giving schematic diagrams of the molecules in each structure and of the interactions between them.

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Expression Atlas

Category: Gene information search

Subcategories: EMBL

The Expression Atlas provides information on gene expression patterns under different biological conditions such as a gene knock out, a plant treated with a compound, or in a particular organism part or cell. It includes both microarray and RNA-seq data. The data is re-analysed in-house to detect interesting expression patterns under the conditions of the original experiment. There are two components to the Expression Atlas, the Baseline Atlas and the Differential Atlas. The Baseline Atlas displ... Registration not required.

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ChEMBL protein-ligand interaction

Category: Protein informations

Subcategories: EMBL

ChEMBL, an open-access database, contains more than 5 million interactions between proteins and ligands that have been published in peer-reviewed journals or reported by laboratories and screening centers . Under ChEMBL’s “Ligand Search” tab, you can enter a compound’s SMILES notation in the “List Search” box and click “Fetch Compounds.” On the next page, clicking on the ChEMBL compound identifier under the 2-D drawing takes you to the Compound Report Card page, which includes th... Registration not required.

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