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NCBI


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BLASTN logo
search nucleotide subjects using a nucleotide query
Category: DNA alignment
Subcategories: NCBI

BLAST nucleotide (BLASTN) searches nucleotide subjects using a nucleotide query. Registration not required.

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Pubmed logo
a free database accessing the MEDLINE database of citations, abstracts and some full text articles on life sciences and biomedical topics
Subcategories: NCBI

PubMed is a free database accessing the MEDLINE database of citations, abstracts and some full text articles on life sciences and biomedical topics. The United States National Library of Medicine (NLM) at the National Institutes of Health (NIH) maintains PubMed as part of the Entrez information retrieval system. Listing an article or journal in PubMed is not endorsement. Registration not required.

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DiRE logo
analysis of transcription factor binding sites
Subcategories: NCBI

DiRE (Distant Regulatory Elements of co-regulated genes) uses gene co-expression data, comparative genomics, and combinatorics of transcription factor binding sites (TFBSs) to find TFBS-association signatures that can be used for discriminating specific regulatory functions. DiRE's unique feature is the detection of REs outside of proximal promoter regions, as it takes advantage of the full gene locus to conduct the search. DiRE can predict common REs for any set of input genes for which the use... Registration not required.

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Primer Blast logo
online PCR primer design
Subcategories: NCBI
Primer Blast allows: to design PCR primers

Primer Blast is a web application that uses Primer3 to design PCR primers and then submits them to BLAST search against user-selected database. The blast results are then automatically analyzed to avoid primer pairs that can cause amplification of targets other than the input template. Registration not required.

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Geo Datasets logo
Category: Gene expression
Subcategories: NCBI

The Gene Expression Omnibus (GEO - NCBI) is a public repository archiving and freely distributing microarray, next-generation sequencing, and other forms of high-throughput functional genomic data submitted by the scientific community. In addition to data storage, a collection of web-based interfaces and applications are available to help users query and download the experiments and gene expression patterns stored in GEO. Registration not required.

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dbSNP logo
Subcategories: NCBI

dbSNP contains human single nucleotide variations, microsatellites, and small-scale insertions and deletions along with publication, population frequency, molecular consequence, and genomic and RefSeq mapping information for both common variations and clinical mutations. Registration not required.

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cobalt logo
Subcategories: NCBI

COBALT computes a multiple protein sequence alignment using conserved domain and local sequence similarity information. Registration not required.

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NeedleN logo
Home Recent Results Saved Strategies Needleman-Wunsch Global Align Nucleotide Sequences
Subcategories: NCBI

The Needleman-Wunsch global alignment (now hosted by BLAST/NLM) performs a global alignment on two sequences. It is commonly used in bioinformatics to align protein or nucleotide sequences. Registration not required.

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NCBI Gene logo
Subcategories: ncbi

Gene (NCBI) is a searchable database of genes, from RefSeq genomes, and defined by sequence and/or located in the NCBI Map Viewer Registration not required.

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Genome Data Viewer logo
Subcategories: ncbi

The Genome Data Viewer, NCBI genome browser, allows you to view and search an organism's complete genome, display chromosome maps, and zoom into progressively greater levels of detail, down to the sequence data for a region of interest. Registration not required.

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BLASTP logo
Subcategories: NCBI

Search protein databases with a protein query sequence to either identify the query sequence or find protein sequences similar to the query.Searches can be refined using algorythms available in the page: PSI-Blast, PHI-BLAST & DELTA-BLAST. Registration not required.

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OMIM logo
Online Mendelian Inheritance in Man
Subcategories: ncbi

OMIM (Online Mendelian Inheritance in Man) is a compendium of human genes and genetic phenotypes. The full-text, referenced overviews in OMIM contain information on all known mendelian disorders and over 12,000 genes. OMIM focuses on the relationship between phenotype and genotype. Registration not required.

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multi-zPicture logo
Category: DNA alignment
Subcategories: NCBI

zPicture is a dynamic alignment and visualization tool that is based on blastz alignment program utilized by PipMaker. zPicture alignments can be automatically submitted to rVista 2.0 to identify conserved transcription factor binding sites. Registration not required.

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zPicture logo
Subcategories: NCBI

DNA or genome alignment and visualization tool based on blastz alignment program. Alignments can be automatically submitted to rVista 2.0 to identify evolutionary conserved transcription factor binding sites. Registration not required.

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Nucleotide logo
Subcategories: ncbi

The Nucleotide database (NCBI) is a collection of sequences from several sources, including GenBank, RefSeq, TPA and PDB. Genome, gene and transcript sequence data provide the foundation for biomedical research and discovery. Registration not required.

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Geo Profiles logo
Subcategories: NCBI

The Gene Expression Omnibus (GEO - NCBI) is a public repository that archives and freely distributes microarray, next-generation sequencing, and other forms of high-throughput functional genomic data submitted by the scientific community. In addition to data storage, a collection of web-based interfaces and applications are available to help users query and download the experiments and gene expression patterns stored in GEO. Registration not required.

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PubChem logo
NCBI
Subcategories: ncbi

PubChem (NCBI) provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem includes substance information, compound structures, and BioActivity data in three primary databases, Pcsubstance, Pccompound, and PCBioAssay, respectively. The Substance/Compound database, where possible, provides links to BioAssay description, literature, references, and assay data points. The BioAssay database also includes links back... Registration not required.

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NCBI protein logo
Subcategories: ncbi

The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB. Protein sequences are the fundamental determinants of biological structure and function. Registration not required.

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Genome Project logo
searchable collection of complete and incomplete large-scale sequencing, assembly, annotation, and mapping projects for cellular organisms
Subcategories: ncbi

The NCBI Entrez Genome Project database is intended to be a searchable collection of complete and incomplete (in-progress) large-scale sequencing, assembly, annotation, and mapping projects for cellular organisms. The database is organized into organism-specific overviews that function as portals from which all projects in the database pertaining to that organism can be browsed and retrieved (see Figure 1). For example, you will find all information regarding the human genome project on this pro... Registration not required.

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Genome logo
Subcategories: ncbi

The Genome database (NCBI) provides views for a variety of genomes, complete chromosomes, sequence maps with contigs, and integrated genetic and physical maps. The database is organized in six major organism groups: Archaea, Bacteria, Eukaryotae, Viruses, Viroids, and Plasmids and includes complete chromosomes, organelles and plasmids as well as draft genome assemblies. Registration not required.

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Sequence Read Archive (SRA) logo
Subcategories: ncbi

SRA stores raw sequencing data from the next generation of sequencing platforms including Roche 454 GS System®, Illumina Genome Analyzer®, Applied Biosystems SOLiD® System, Helicos Heliscope®, Complete Genomics®, and others Registration not required.

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dbGaP logo
Category: Diseases search
Subcategories: NCBI

The database of Genotypes and Phenotypes (dbGaP) was developed to archive and distribute the results of studies that have investigated the interaction of genotype and phenotype. Such studies include genome-wide association studies, medical sequencing, molecular diagnostic assays, as well as association between genotype and non-clinical traits. Registration not required.

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GTR | Genetic Testing Registry logo
Subcategories: NCBI

GeneTests Web site is a publicly funded medical genetics information resource developed for physicians, other healthcare providers, and researchers, available at no cost to all interested persons. Registration not required.

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ClinVar logo
Subcategories: ncbi

ClinVar is a unified, curated, publicly available database about sequence variation and its relationship to health. It aggregates information about sequence variation and its relationship to human health. Registration not required.

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HomoloGene logo
Subcategories: NCBI

HomoloGene (NCBI) is a system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes. Registration not required.

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EST logo
Subcategories: NCBI

The EST database (NCBI) is a collection of short single-read transcript sequences from GenBank. These sequences provide a resource to evaluate gene expression, find potential variation, and annotate genes. Registration not required.

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VecScreen logo
Category: DNA sequencing
Subcategories: NCBI

VecScreen quickly identifies contaminating vectors in your sequence. VecScreen is a system that quickly finds segments of a nucleic acid sequence that may be of vector origin. It helps researchers identify and remove any segments of vector origin before they analyze or submit sequences. Registration not required.

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GEO logo
Gene Expression Omnibus
Subcategories: NCBI

GEO is a public functional genomics data repository supporting MIAME-compliant data submissions. Array- and sequence-based data are accepted. Tools are provided to help users query and download experiments and curated gene expression profiles. Registration not required.

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