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GENE INFORMATION SEARCH


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VEGA - HAVANA logo
VEGA - HAVANA
Category: Gene information search
Subcategories: Sanger

The Vertebrate Genome Annotation (VEGA) genome browser is a central repository for high quality manual annotation of vertebrate finished genome sequence. The majority of the annotation is from the HAVANA group at the Welcome Trust Sanger Institute.

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Gene Enhancer Atlas logo
Gene Enhancer Atlas
Category: Gene information search

The database provides enhancer annotation in nine species, including human (hg19), mouse (mm9), fly (dm3), worm (ce10), zebrafish (danRer10), rat (rn5), yeast (sacCer3), chicken (galGal4), and boar (susScr3)(Andersson et al.Nature 507,455–461, 2014, Gao & Qian, Nucleic Acids Research, 48, D58, 2020).

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GEO logo
GEO
Gene Expression Omnibus
Category: Gene information search
Subcategories: NCBI

GEO is a public functional genomics data repository supporting MIAME-compliant data submissions. Array- and sequence-based data are accepted. Tools are provided to help users query and download experiments and curated gene expression profiles.

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EST logo
EST
Category: Gene information search
Subcategories: NCBI

The EST database (NCBI) is a collection of short single-read transcript sequences from GenBank. These sequences provide a resource to evaluate gene expression, find potential variation, and annotate genes.

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Expression Atlas logo
Expression Atlas
Category: Gene information search
Subcategories: EMBL

The Expression Atlas provides information on gene expression patterns under different biological conditions such as a gene knock out, a plant treated with a compound, or in a particular organism part or cell. It includes both microarray and RNA-seq data. The data is re-analysed in-house to detect interesting expression patterns under the conditions of the original experiment. There are two components to the Expression Atlas, the Baseline Atlas and the Differential Atlas. The Baseline Atlas displ

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GTExPortal logo
GTExPortal
The Genotype-Tissue Expression Consortium
Category: Gene information search

The GTEx Consortium adopts a strategy called expression quantitative trait loci (eQTL) mapping that allows the researchers to generate a comprehensive catalogue of associations between genetic variation and gene expression across many tissues in many individuals. The processed data are available in this website (see: Nat Genet. 2013 June ; 45(6): 580–585; Ward & Gilad Nature 550:190, 2017).

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