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AMOS logo
From SourceForge

AMOS is a collection of tools and class interfaces for the assembly of DNA reads. The package includes a robust infrastructure, modular assembly pipelines, and tools for overlapping, consensus generation, contigging, and assembly manipulation. Registration not required.

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ENCODE logo
Encyclopedia of DNA Elements

A major goal of the Encyclopedia of DNA Elements (ENCODE) is to annotate all functional elements of the human genome including protein-coding genes, pseudogenes, and non-coding transcribed loci and to catalog the products of transcription including splice isoforms and regulatory elements that control the cells and circumstances in which a gene is active. Registration not required.

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Experimental Design Assistant (EDA) logo

The EDA allows scientists to create a visual representation of an animal experiment by laying out its key elements — hypothesis, experimental method and planned analysis — in logically connected, coloured boxes. The software then uses a built-in set of rules to spot potential prob¬lems, and suggests refinements. These may be simple — the researcher hasn’t specified how to randomize animals to the control or treatment arm — or more complex: there are potential confounding variables in the control and trial arms. The tool can also assist scientists with calculating the sample size needed to ensure a sta¬tistically robust result, or with randomization (see D Cressey, Nature 531:126, 2016; Percie du Sert1 et al., Nat Meth 14:1024, 2017). Registration required.

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Stat Calculator logo
Subcategories: StatPages

This is a simple but fairly general numeric expression evaluator, with a large number of built-in transcendental functions. Registration not required.

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BLASTP logo
Subcategories: NCBI

Search protein databases with a protein query sequence to either identify the query sequence or find protein sequences similar to the query.Searches can be refined using algorythms available in the page: PSI-Blast, PHI-BLAST & DELTA-BLAST. Registration not required.

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Wikidoc.org logo
The Living Textbook of Medicine

WikiDoc was created to freely share medical knowledge and to foster collaboration among healthcare providers. Launched by Dr. C. Michael Gibson of Harvard Medical School in late 2005, WikiDoc is the first and largest wiki dedicated to medicine on the Internet. WikiDoc is kept up to date by over 5,000 collaborators around the world. The content has now been updated nearly half a million times. There is no pharmaceutical or device industry support for the site. WikiDoc is intended to be a free shared resource for housestaff (in preparation for morning report), medical students (in preparation for morning rounds) and fellows (in preparation for conferences). Nurses and attending physicians may find WikiDoc valuable in improving and maintaining their fund of general medical knowledge. Registration not required.

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Report on Carcinogens (NTP) logo
Category: Cancer etiology

Report on Carcinogens, U.S. Department of Health and Human Services, Public Health Service, National Toxicology Program . Registration not required.

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Enzyme Finder logo
browse restriction enzymes by name, sequence, overhang, or type

Enzyme Finder by New England Biolabs allows you to select restriction enzymes by name, sequence, overhang, or type. Sequences should be entered using single letter code nomenclature. In search results, enzymes supplied by NEB are listed first and displayed as links. Registration not required.

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Probe Miner logo
Chemical Probes Objective Assessment Resource

The Probe Miner: Objective Assessment of Chemical Probes is a community resource for the evaluation of chemical probes based on large-scale, publicly available, medicinal chemistry data. It is intended to empower researchers to select the best probes based on objective, data driven criteria. This resource provides evaluation of > 1.8m small molecules against for >2,200 human targets and is regularly updated in response to updates in the publicly available medicinal chemistry data. Our continuing data curation efforts will ensure that this resource is continually evolving and improving. Registration not required.

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PRALINE logo
Category: DNA alignment

PRALINE is a multiple sequence alignment program with many options to optimise the information for each of the input sequences; e.g. homology-extended alignment, predicted secondary structure and/or transmembrane structure information and iteration capabilities. Registration not required.

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GeneWise logo
Pairwise Sequence Alignment
Category: DNA sequencing
Subcategories: EMBL

The Wise2 form compares a protein sequence to a genomic DNA sequence, allowing for introns and frameshifting errors. Registration not required.

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BASE logo

BASE is a comprehensive free web-based database solution for the massive amounts of data generated by microarray analysis. Registration not required.

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OMIM logo
Online Mendelian Inheritance in Man
Subcategories: ncbi

OMIM (Online Mendelian Inheritance in Man) is a compendium of human genes and genetic phenotypes. The full-text, referenced overviews in OMIM contain information on all known mendelian disorders and over 12,000 genes. OMIM focuses on the relationship between phenotype and genotype. Registration not required.

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YASS logo
Category: DNA alignment

YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text format (it produces local pairwise alignments). Registration not required.

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PipeAlign logo

PipeAlign2 is a protein family analysis tool integrating a multi-step process ranging from the search for sequence homologues in protein and 3D structure databases to the structural / functional annotation of the family. The complete, automatic pipeline takes a single sequence or a set of sequences as input and constructs a high-quality, validated multiple sequence alignment (MSA) in which sequences are clustered into potential functional subgroups. Registration not required.

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SCAN2 logo
Category: DNA alignment

SCAN2 is a we app for aligning two multimegabyte-size genome sequences Registration not required.

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ICRP logo
Internationa Cancer Partenship
Category: Cancer research

Established in 2000, International Cancer Research Partnership (ICRP) is a unique alliance of cancer organizations working together to enhance global collaboration and strategic coordination of research. Registration not required.

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PS: Power and Sample Size Calculation logo

PS is an interactive Windows program from Vanderbilt University for performing power and sample size calculations. It can be used for studies with dichotomous, continuous, or survival response measures. Registration not required.

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PCR Optimization logo

This online program helps to evaluate the quantity of primers and nucleotides for optimal PCR reaction and the necessary number of cycles. Registration not required.

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Broad Bioimage Benchmark Collection logo
Broad Bioimage Benchmark Collection allows: Image database, Broad

The Broad Bioimage Benchmark Collection (BBBC) is a collection of freely downloadable microscopy image sets intended as a resource for testing and validating automated image-analysis algorithms. In addition to the images themselves, each set includes a description of the biological application and some type of ground truth. Registration not required.

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